Publications

 

(*equal contributions; ¥corresponding author)

  • K.R. Veeramah, A.E. Woerner, L. Johnstone, L. Carbone, Larry Wilhelm, J.D. Wall, M.F.Hammer. Demographic Analysis of Whole Genome Sequencing Data from the Four Gibbon Genera. Genetics (in revision) Available in Biorxiv
  • Carbone L and the International Consortium for the sequencing and annotation of the gibbon genome (2014) Gibbon genome and the fast karyotype evolution of small apes. Nature. 513(7517):195-201. PMID: 25209798. News & Views: Something to swing about
  • Wacholder AC, Cox C, Meyer TJ, Ruggiero RP, Vemulapalli V, Damert A, Carbone L, Pollock DD. Inference of transposable element ancestry. PLoS Genet. 2014  Aug 14;10(8):e1004482. doi: 10.1371. PMID: 25121584
  • Alberto L. Abbate, Gemma Macchia, Pietro D’ Addabbo, Angelo Lonoce, Doron Tolomeo, Domenico Trombetta, Klaas Kok, Christoph Bartenhagen, Christopher W. Whelan, Orazio Palumbo, Marco Severgnini, Ingrid Cifola, Martin Dugas, Massimo Carella, Gianluca De Bellis, Mariano Rocchi, Lucia Carbone and Clelia T Storlazzi. Genomic organization and evolution of double minutes/homogeneously staining regions (dmin/hsr) with MYC amplification in human cancer. Nucleic Acids Res. 2014 Oct 1;42(14):9131-45. doi: 10.1093/nar/gku590. PMID: 25034695
  • Jeffrey D. Wall, Sung K. Kim, Francesca Luca, Lucia Carbone, Alan R. Mootnick, Pieter J. de Jong, Anna Di Rienzo (2013) Incomplete lineage sorting is common in extant gibbon genera. PLoS ONE 8(1): e53682 PMID: 23341974
  • Oronzo Capozzi*¥, Lucia Carbone*¥, Roscoe R Stanyon, Annamaria Marra, Fengtang Yang, Christopher W. Whelan, Pieter J de Jong, Mariano Rocchi, and Nicoletta Archidiacono (2012) A Comprehensive Molecular Cytogenetic Analysis of Chromosome Rearrangements in Gibbons. Genome Res. 2012 Dec;22(12):2520-8. PMID: 22892276
  • Thomas J. Meyer, Adam T. McLain, J. Michael Oldenburg, Christopher Faulk, Matthew G. Bourgeois, Erin M. Conlin, Alan R. Mootnick, Pieter J. de Jong, Christian Roos, Lucia Carbone, and Mark A. Batzer (2012) An Alu-based phylogeny of gibbons (Hylobatidae). Mol Biol Evol. 2012 Nov;29(11):3441-50. PMID: 22683814 
  • Lucia Carbone¥, R. Alan Harris, Alan R. Mootnick, Aleksandar Milosavljevic, David IK Martin, Mariano Rocchi et al. (2012) Centromere remodeling in Hoolock leuconedys (Hylobatidae) by a new transposable element unique to the gibbons. Genome Biol Evol. 2012; 4(7):648-58. PMID: 22593550
  • Hampton, O.A., Miller, C.A., Koriabine, M., Li, J., Den Hollander, P., Carbone, L., Nefedov, M., Ten Hallers, B.F., Lee, A.V., De Jong, P.J., et al. (2011). Long-range massively parallel mate pair sequencing detects distinct mutations and similar patterns of structural mutability in two breast cancer cell lines. Cancer Genet 204, 447-457. PMID: 21962895
  • Kim, S.K., Carbone, L., Becquet, C., Mootnick, A.R., Li, D.J., de Jong, P.J., and Wall, J.D. (2011). Patterns of genetic variation within and between Gibbon species. Mol Biol Evol 28, 2211-2218. PMID: 21368318 Full article
  • Nefedov, M., Carbone, L., Field, M., Schein, J., and de Jong, P.J. (2011). Isolation of specific clones from nonarrayed BAC libraries through homologous recombination. J Biomed Biotechnol 2011, 560124. PMID: 20981149 Full article
  • Abi-Rached, L., Kuhl, H., Roos, C., ten Hallers, B., Zhu, B., Carbone, L., de Jong, P.J., Mootnick, A.R., Knaust, F., Reinhardt, R., et al. (2010). A small, variable, and irregular killer cell Ig-like receptor locus accompanies the absence of MHC-C and MHC-G in gibbons. J Immunol 184, 1379-1391. PMID: 20026738 Full article
  • Capra, J.A., Carbone, L., Riesenfeld, S.J., and Wall, J.D. (2010). Genomics through the lens of next-generation sequencing. Genome Biol 11, 306. PMID: 20587080 Full article
  • Carbone, L., D’Addabbo, P., Cardone, M.F., Teti, M.G., Misceo, D., Vessere, G.M., de Jong, P.J., and Rocchi, M. (2009). A satellite-like sequence, representing a “clone gap” in the human genome, was likely involved in the seeding of a novel centromere in macaque. Chromosoma 118, 269-277. PMID: 19048265 Full Article
  • Carbone, L., Harris, R.A., Vessere, G.M., Mootnick, A.R., Humphray, S., Rogers, J., Kim, S.K., Wall, J.D., Martin, D., Jurka, J., et al. (2009). Evolutionary breakpoints in the gibbon suggest association between cytosine methylation and karyotype evolution. PLoS Genetics, 2009 Jun;5(6) PMID: 19557196 Full Article Editorial
  • Carbone, L., Mootnick, A.R., Nadler, T., Moisson, P., Ryder, O., Roos, C., and de Jong, P.J. (2009c). A chromosomal inversion unique to the northern white-cheeked gibbon. PLoS One 4, e4999. PMID: 19319194 Full Article
  • Cardone, M.F., Alonso, A., Pazienza, M., Ventura, M., Montemurro, G., Carbone, L., de Jong, P.J., Stanyon, R., D’Addabbo, P., Archidiacono, N., et al. (2006). Independent centromere formation in a capricious, gene-free domain of chromosome 13q21 in Old World monkeys and pigs. Genome Biol 7, R91. PMID: 17040560 Full Article
  • Carbone, L., Nergadze, S.G., Magnani, E., Misceo, D., Francesca Cardone, M., Roberto, R., Bertoni, L., Attolini, C., Francesca Piras, M., de Jong, P., et al. (2006a). Evolutionary movement of centromeres in horse, donkey, and zebra. Genomics 87, 777-782. PMID: 16413164 Full Article
  • Carbone, L., Vessere, G.M., ten Hallers, B.F., Zhu, B., Osoegawa, K., Mootnick, A., Kofler, A., Wienberg, J., Rogers, J., Humphray, S., et al. (2006b). A high-resolution map of synteny disruptions in gibbon and human genomes. PLoS Genetics 2006 Dec 29;2(12):e22. PMID: 17196042 Full Article
  • Misceo, D., Cardone, M.F., Carbone, L., D’Addabbo, P., de Jong, P.J., Rocchi, M., and Archidiacono, N. (2005). Evolutionary history of chromosome 20. Mol Biol Evol 22, 360-366. PMID: 15496555 Full Article
  • Ventura, M., Weigl, S., Carbone, L., Cardone, M.F., Misceo, D., Teti, M., D’Addabbo, P., Wandall, A., Bjorck, E., de Jong, P.J., et al. (2004). Recurrent sites for new centromere seeding. Genome Res 14, 1696-1703. PMID: 15342555 Full Article
  • Locke, D.P., Segraves, R., Carbone, L., Archidiacono, N., Albertson, D.G., Pinkel, D., and Eichler, E.E. (2003). Large-scale variation among human and great ape genomes determined by array comparative genomic hybridization. Genome Res 13, 347-357. PMID: 12618365 Full Article
  • Carbone, L., Ventura, M., Tempesta, S., Rocchi, M., and Archidiacono, N. (2002). Evolutionary history of chromosome 10 in primates. Chromosoma 111, 267-272. PMID: 12424526
  • Ballarati, L., Piccini, I., Carbone, L., Archidiacono, N., Rollier, A., Marozzi, A., Meneveri, R., and Ginelli, E. (2002). Human genome dispersal and evolution of 4q35 duplications and interspersed LSau repeats. Gene 296, 21-27. PMID: 12383499

 

 

 

 

 

 

 

 

 

Comments are closed